I develop and contribute to open-source, freely available software for the analysis of high-throughput genomic data. My code is available through R packages that can be installed from GitHub or the Bioconductor Project.

developer

  • dmrseq Usage Stats R/Bioconductor package for inference for differentially methylated regions (DMRs) from bisulfite sequencing, available on Bioconductor

  • scDD Usage Stats R/Bioconductor package for the identification of differentially distributed genes in single-cell RNA-seq, available on Bioconductor

  • MADGiC R package for the identification of cancer driver genes by integrating somatic mutation, expression, replication timing, and functional impact, available on GitHub

contributor

  • oligoGames R package for the analysis of tiled massively parallel reporter assays (MPRAs), available on GitHub